{
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  "Package": "statgenGxE",
  "Type": "Package",
  "Title": "Genotype by Environment (GxE) Analysis",
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  "Date": "2025-11-12",
  "Authors@R": "c(person(given = \"Bart-Jan\", \nfamily = \"van Rossum\",\nemail = \"bart-jan.vanrossum@wur.nl\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-8673-2514\")),\nperson(given = \"Fred\",\nfamily = \"van Eeuwijk\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0003-3672-2921\")),\nperson(given = \"Martin\",\nfamily = \"Boer\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-1879-4588\")),\nperson(given = \"Marcos\",\nfamily = \"Malosetti\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-8150-1397\")),\nperson(given = \"Daniela\",\nfamily = \"Bustos-Korts\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0003-3827-6726\")),\nperson(given = \"Emilie J\",\nfamily = \"Millet\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-2913-4892\")),\nperson(given = \"Joao\",\nfamily = \"Paulo\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4180-0763\")),\nperson(given = \"Maikel\",\nfamily = \"Verouden\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4893-3323\")),\nperson(given = \"Willem\",\nfamily = \"Kruijer\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7179-1733\")),\nperson(given = \"Ron\",\nfamily = \"Wehrens\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-8798-5599\")),\nperson(given = \"Choazhi\",\nfamily = \"Zheng\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0001-6030-3933\")),\nperson(given = \"Turbet Delof\",\nfamily = \"Michel\",\nrole = \"ctb\"),\nperson(given = \"Rameau\",\nfamily = \"Jean-Francois\",\nrole = \"ctb\")\n)",
  "Description": "Analysis of multi environment data of plant breeding\nexperiments following the analyses described in Malosetti,\nRibaut, and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>.\nOne of a series of statistical genetic packages for\nstreamlining the analysis of typical plant breeding experiments\ndeveloped by Biometris. Some functions have been created to be\nused in conjunction with the R package 'asreml' for the\n'ASReml' software, which can be obtained upon purchase from\n'VSN' international (<https://vsni.co.uk/software/asreml-r/>).",
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  "URL": "https://biometris.github.io/statgenGxE/index.html,\nhttps://github.com/Biometris/statgenGxE/",
  "BugReports": "https://github.com/Biometris/statgenGxE/issues",
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  "Repository": "https://biometris.r-universe.dev",
  "Date/Publication": "2025-11-12 08:55:29 UTC",
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  "Author": "Bart-Jan van Rossum [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-8673-2514>),\nFred van Eeuwijk [ctb] (ORCID: <https://orcid.org/0000-0003-3672-2921>),\nMartin Boer [ctb] (ORCID: <https://orcid.org/0000-0002-1879-4588>),\nMarcos Malosetti [ctb] (ORCID: <https://orcid.org/0000-0002-8150-1397>),\nDaniela Bustos-Korts [ctb] (ORCID:\n<https://orcid.org/0000-0003-3827-6726>),\nEmilie J Millet [ctb] (ORCID: <https://orcid.org/0000-0002-2913-4892>),\nJoao Paulo [ctb] (ORCID: <https://orcid.org/0000-0002-4180-0763>),\nMaikel Verouden [ctb] (ORCID: <https://orcid.org/0000-0002-4893-3323>),\nWillem Kruijer [ctb] (ORCID: <https://orcid.org/0000-0001-7179-1733>),\nRon Wehrens [ctb] (ORCID: <https://orcid.org/0000-0002-8798-5599>),\nChoazhi Zheng [ctb] (ORCID: <https://orcid.org/0000-0001-6030-3933>),\nTurbet Delof Michel [ctb],\nRameau Jean-Francois [ctb]",
  "Maintainer": "Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>",
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        "Experiment",
        "parent1",
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        "plant.height",
        "tassel.height",
        "ear.height",
        "year",
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        "geneticGroup"
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      "table": false,
      "tojson": true
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      "concept": [
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    },
    {
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      "concept": [
        "Mixed model analysis"
      ],
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        "CRDR"
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    },
    {
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      "title": "Get diagnostics for an object of class varComp",
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    },
    {
      "page": "dropsPheno",
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    {
      "page": "fitted.AMMI",
      "title": "Extract fitted values.",
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    },
    {
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      ],
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      ]
    },
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    },
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    },
    {
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      "page": "gxeMegaEnv",
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        "mega environments"
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    },
    {
      "page": "gxeStability",
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        "stability"
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        "gxeStability"
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    },
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      "page": "gxeVarComp",
      "title": "Mixed model analysis of GxE table of means",
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        "Mixed model analysis"
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    },
    {
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      "title": "Calculate heritability",
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      ],
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        "herit"
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    {
      "page": "multMissing",
      "title": "Estimate missing values in multivariate data",
      "topics": [
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    },
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      "title": "Plot function for class AMMI",
      "concept": [
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    },
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    },
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    },
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      "title": "Extract residuals.",
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        "residuals.FW"
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      "title": "Extract residuals.",
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      "source": "statgenGxE.Rmd",
      "filename": "statgenGxE.html",
      "title": "Genotype by Environment analysis using statgenGxE",
      "author": "Bart-Jan van Rossum",
      "engine": "knitr::rmarkdown",
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        "The statgenGxE package",
        "Data preparation",
        "Coloring of genotypes and trials",
        "Mixed model analysis of GxE table of means",
        "Model fitted with all terms as fixed",
        "Model fitted with all terms as random",
        "Mixed model",
        "Finlay-Wilkinson Analysis",
        "AMMI Analysis",
        "GGE Analysis",
        "Identifying mega environments",
        "Stability measures",
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        "Fitted values and residuals",
        "Reporting",
        "References"
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      "created": "2019-05-03 12:56:39",
      "modified": "2025-06-06 12:59:38",
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