Package: statgenIBD
Type: Package
Title: Calculation of IBD Probabilities
Description: For biparental, three and four-way crosses Identity by
        Descent (IBD) probabilities can be calculated using Hidden
        Markov Models and inheritance vectors following Lander and
        Green (<https://www.jstor.org/stable/29713>) and Huang
        (<doi:10.1073/pnas.1100465108>). One of a series of statistical
        genetic packages for streamlining the analysis of typical plant
        breeding experiments developed by Biometris.
Version: 1.0.11
Date: 2026-05-05
Authors@R: c(person(given = "Martin", 
                    family = "Boer", 
                    email = "martin.boer@wur.nl", 
                    role = "aut",
                    comment = c(ORCID = "0000-0002-1879-4588")),
            person(given = "Bart-Jan", 
                   family = "van Rossum", 
                   email = "bart-jan.vanrossum@wur.nl", 
                   role = c("aut", "cre"),
                   comment = c(ORCID = "0000-0002-8673-2514")),
            person(given = "Wenhao", 
                   family = "Li", 
                   role = "ctb",
                   comment = c(ORCID = "0000-0001-5719-5775")),
            person(given = "Johannes", 
                   family = "Kruisselbrink",
                   role = "ctb",
                   comment = c(ORCID = "0000-0003-1673-5725")))
License: GPL
Encoding: UTF-8
Depends: R (>= 3.6)
Imports: data.table, ggplot2, Matrix, R.utils, rlang, Rcpp, statgenGWAS
        (>= 1.0.9), stringi
LinkingTo: Rcpp, RcppArmadillo
Roxygen: list(markdown = TRUE)
Suggests: rmarkdown, knitr, tinytest
VignetteBuilder: knitr
URL: https://biometris.github.io/statgenIBD/index.html,
        https://github.com/Biometris/statgenIBD/
BugReports: https://github.com/Biometris/statgenIBD/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libicu-dev
Repository: https://biometris.r-universe.dev
Date/Publication: 2026-05-05 09:47:26 UTC
RemoteUrl: https://github.com/biometris/statgenibd
RemoteRef: HEAD
RemoteSha: 4703dcf8c372d2f98b27ee1b755445042b662568
NeedsCompilation: yes
Packaged: 2026-06-24 04:59:56 UTC; root
Author: Martin Boer [aut] (ORCID: <https://orcid.org/0000-0002-1879-4588>),
  Bart-Jan van Rossum [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8673-2514>),
  Wenhao Li [ctb] (ORCID: <https://orcid.org/0000-0001-5719-5775>),
  Johannes Kruisselbrink [ctb] (ORCID:
    <https://orcid.org/0000-0003-1673-5725>)
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>