NEWS
statgenMPP 1.0.4 (2025-02-11)
readRABBITMPP now reads the output files producted by open source version of RABBIT, available at https://github.com/Biometris/RABBIT. Older files created using Mathematica are still read as well.- A new plot (
plotType = "parCIs") is now available for plotting the parental effects and the confidence intervals around them.
statgenMPP 1.0.3 (2024-10-29)
- The output of
selQTLMPP now contains the standard errors of the effects. The standard errors are added in both the full output (GWAResult) and the table with QTLs (signSnp).
- The output of the two plots in QTLProfileExt is properly aligned again.
- Functions no longer rely on soft-deprecated ggplot2 functions.
statgenMPP 1.0.2 (2022-12-02)
- A minor bug in the summary for
gDataMPP objects is fixed. Now the correct number of genotypes is shown also when there is only one cross.
- A citation file was added.
statgenMPP 1.0.1.1 (2022-08-24)
- Internal fix. No user visible changes.
statgenMPP 1.0.1 (2022-08-22)
- The logic in the scan process is improved, leading to much lower computation times. * Computations can now be done in parallel by registering a parallel back-end and setting
parallel = TRUE in the selQTLMPP function.
- It is now possible to include a polygenic effect in the models to correct for background genetic information.
- A new function
createGDataMPP is added to directly create a gDataMPP object from an IBDprob object (as created by statgenIBD) and a data.frame with phenotypic data.
readRABBIT is renamed to readRABBITMPP to prevent future conflicts with a similar function in statgenIBD- The trait column in the example data is renamed from "pheno" to "yield".
statgenMPP 1.0.0 (2022-03-21)