Package: LMMsolver 1.0.9
Bart-Jan van Rossum
LMMsolver: Linear Mixed Model Solver
An efficient and flexible system to solve sparse mixed model equations. Important applications are the use of splines to model spatial or temporal trends as described in Boer (2023). (<doi:10.1177/1471082X231178591>).
Authors:
LMMsolver_1.0.9.tar.gz
LMMsolver_1.0.9.zip(r-4.5)LMMsolver_1.0.9.zip(r-4.4)LMMsolver_1.0.9.zip(r-4.3)
LMMsolver_1.0.9.tgz(r-4.5-x86_64)LMMsolver_1.0.9.tgz(r-4.5-arm64)LMMsolver_1.0.9.tgz(r-4.4-x86_64)LMMsolver_1.0.9.tgz(r-4.4-arm64)LMMsolver_1.0.9.tgz(r-4.3-x86_64)LMMsolver_1.0.9.tgz(r-4.3-arm64)
LMMsolver_1.0.9.tar.gz(r-4.5-noble)LMMsolver_1.0.9.tar.gz(r-4.4-noble)
LMMsolver_1.0.9.tgz(r-4.4-emscripten)LMMsolver_1.0.9.tgz(r-4.3-emscripten)
LMMsolver.pdf |LMMsolver.html✨
LMMsolver/json (API)
NEWS
| # Install 'LMMsolver' in R: |
| install.packages('LMMsolver', repos = c('https://biometris.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biometris/lmmsolver/issues
- APSIMdat - Simulated Biomass as function of time using APSIM wheat.
- SeaSurfaceTemp - Sea Surface Temperature
- multipop - Simulated QTL mapping data set
Last updated 2 months agofrom:68af65ec66. Checks:11 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 14 2025 |
| R-4.5-win-x86_64 | OK | Feb 14 2025 |
| R-4.5-mac-x86_64 | OK | Feb 14 2025 |
| R-4.5-mac-aarch64 | OK | Feb 14 2025 |
| R-4.5-linux-x86_64 | OK | Feb 14 2025 |
| R-4.4-win-x86_64 | OK | Feb 14 2025 |
| R-4.4-mac-x86_64 | OK | Feb 14 2025 |
| R-4.4-mac-aarch64 | OK | Feb 14 2025 |
| R-4.3-win-x86_64 | OK | Feb 14 2025 |
| R-4.3-mac-x86_64 | OK | Feb 14 2025 |
| R-4.3-mac-aarch64 | OK | Feb 14 2025 |
Exports:diagnosticsMMEdisplayMMELMMsolveLMMsolveObjectmultinomialobtainSmoothTrendspl1Dspl2Dspl3D
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Simulated Biomass as function of time using APSIM wheat. | APSIMdat |
| Coefficients from the mixed model equations of an LMMsolve object. | coef.LMMsolve |
| Deviance of an LMMsolve object | deviance.LMMsolve |
| Give diagnostics for mixed model coefficient matrix C and the cholesky decomposition | diagnosticsMME |
| Display the sparseness of the mixed model coefficient matrix | displayMME |
| Fitted values of an LMMsolve object. | fitted.LMMsolve |
| Solve Linear Mixed Models | LMMsolve |
| Fitted LMMsolve Object | LMMsolveObject |
| Log-likelihood of an LMMsolve object | logLik.LMMsolve |
| Family Object for Multinomial Model | multinomial |
| Simulated QTL mapping data set | multipop |
| Obtain Smooth Trend. | obtainSmoothTrend |
| Predict function | predict.LMMsolve |
| Residuals of an LMMsolve object. | residuals.LMMsolve |
| Sea Surface Temperature | SeaSurfaceTemp |
| Fit P-splines | spl1D spl2D spl3D |
| Summarize Linear Mixed Model fits | print.summary.LMMsolve summary.LMMsolve |
