The statgenSTA Package | Data preparation | Creating a TD object | Example | Metadata | Add extra data to a TD object | Summarizing a TD object | Plotting a TD object | Layout plot | Map plot | Box plot | Correlation plot | Scatter plot matrix | Modeling | Model types | Spatial models | Model summary | Model plots | Base plots | Spatial plots | Outlier detection | Model reports | Extracting model results | Adding extra variables | Prepare data for GxE analysis | References
Package: statgenSTA 1.0.15
Bart-Jan van Rossum
statgenSTA: Single Trial Analysis (STA) of Field Trials
Phenotypic analysis of field trials using mixed models with and without spatial components. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Authors:
statgenSTA_1.0.15.tar.gz
statgenSTA_1.0.15.zip(r-4.7)statgenSTA_1.0.15.zip(r-4.6)statgenSTA_1.0.15.zip(r-4.5)
statgenSTA_1.0.15.tgz(r-4.6-any)statgenSTA_1.0.15.tgz(r-4.5-any)
statgenSTA_1.0.15.tar.gz(r-4.7-any)statgenSTA_1.0.15.tar.gz(r-4.6-any)
statgenSTA_1.0.15.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
statgenSTA/json (API)
| # Install 'statgenSTA' in R: |
| install.packages('statgenSTA', repos = c('https://biometris.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biometris/statgensta/issues
Datasets:
Last updated from:cb18f2775c. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 193 | ||
| source / vignettes | OK | 247 | ||
| linux-release-x86_64 | NOTE | 186 | ||
| macos-release-arm64 | NOTE | 155 | ||
| macos-oldrel-arm64 | NOTE | 137 | ||
| windows-devel | NOTE | 188 | ||
| windows-release | NOTE | 168 | ||
| windows-oldrel | NOTE | 165 | ||
| wasm-release | OK | 122 |
Exports:addTDcreateTDdropTDextractSTAfitTDgetMetaoutlierSTAreportsetMetaSTAtoCrossSTAtoTD
Dependencies:bootclicpp11data.tabledotCall64emmeansestimabilityevaluatefarverfieldsggplot2ggrepelgluegridExtragtablehighrisobandknitrlabelinglatticelifecyclelme4mapprojmapsMASSMatrixminqamvtnormnlmenloptrnumDerivqtlR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangS7scalesspamSpATSvctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| DROPS data set | dropsRaw |
| Extract statistics from fitted models | extractSTA |
| Fit single trial mixed model | fitTD |
| Get and set metadata for TD objects | getMeta setMeta |
| Identifying outliers in objects of class STA | outlierSTA |
| Plot function for class STA | plot.STA |
| Plot function for class TD | plot.TD |
| Base method for creating a report | report |
| Report method for class STA | report.STA |
| Convert STA to Cross | STAtoCross |
| Convert STA to TD | STAtoTD |
| Summarizing objects of class 'STA' | summary.STA |
| Summarizing objects of class 'TD' | summary.TD |
| S3 class TD | addTD createTD dropTD TD |
| Field data for a wheat experiment in Mexico | TDHeat05 |
| Field data for a maize experiment in Tlaltizapan, Mexico | TDMaize |
