Package: statgenSTA 1.0.14
Bart-Jan van Rossum
statgenSTA: Single Trial Analysis (STA) of Field Trials
Phenotypic analysis of field trials using mixed models with and without spatial components. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Authors:
statgenSTA_1.0.14.tar.gz
statgenSTA_1.0.14.zip(r-4.5)statgenSTA_1.0.14.zip(r-4.4)statgenSTA_1.0.14.zip(r-4.3)
statgenSTA_1.0.14.tgz(r-4.4-any)statgenSTA_1.0.14.tgz(r-4.3-any)
statgenSTA_1.0.14.tar.gz(r-4.5-noble)statgenSTA_1.0.14.tar.gz(r-4.4-noble)
statgenSTA_1.0.14.tgz(r-4.4-emscripten)statgenSTA_1.0.14.tgz(r-4.3-emscripten)
statgenSTA.pdf |statgenSTA.html✨
statgenSTA/json (API)
NEWS
| # Install 'statgenSTA' in R: |
| install.packages('statgenSTA', repos = c('https://biometris.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biometris/statgensta/issues
Last updated 4 months agofrom:9a30cfd335. Checks:1 OK, 5 NOTE, 1 ERROR. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 12 2025 |
| R-4.5-win | ERROR | Jan 12 2025 |
| R-4.5-linux | NOTE | Jan 12 2025 |
| R-4.4-win | NOTE | Jan 12 2025 |
| R-4.4-mac | NOTE | Jan 12 2025 |
| R-4.3-win | NOTE | Jan 12 2025 |
| R-4.3-mac | NOTE | Jan 12 2025 |
Exports:addTDcreateTDdropTDextractSTAfitTDgetMetaoutlierSTAreportsetMetaSTAtoCrossSTAtoTD
Dependencies:bootclicolorspacedata.tabledotCall64emmeansestimabilityevaluatefansifarverfieldsggplot2ggrepelgluegridExtragtablehighrisobandknitrlabelinglatticelifecyclelme4magrittrmapprojmapsMASSMatrixmgcvminqamunsellmvtnormnlmenloptrnumDerivpillarpkgconfigqtlR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangscalesspamSpATStibbleutf8vctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| DROPS data set | dropsRaw |
| Extract statistics from fitted models | extractSTA |
| Fit single trial mixed model | fitTD |
| Get and set metadata for TD objects | getMeta setMeta |
| Identifying outliers in objects of class STA | outlierSTA |
| Plot function for class STA | plot.STA |
| Plot function for class TD | plot.TD |
| Base method for creating a report | report |
| Report method for class STA | report.STA |
| Convert STA to Cross | STAtoCross |
| Convert STA to TD | STAtoTD |
| Summarizing objects of class 'STA' | summary.STA |
| Summarizing objects of class 'TD' | summary.TD |
| S3 class TD | addTD createTD dropTD TD |
| Field data for a wheat experiment in Mexico | TDHeat05 |
| Field data for a maize experiment in Tlaltizapan, Mexico | TDMaize |
