Package: statgenGxE 1.0.9

Bart-Jan van Rossum

statgenGxE: Genotype by Environment (GxE) Analysis

Analysis of multi environment data of plant breeding experiments following the analyses described in Malosetti, Ribaut, and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).

Authors:Bart-Jan van Rossum [aut, cre], Fred van Eeuwijk [ctb], Martin Boer [ctb], Marcos Malosetti [ctb], Daniela Bustos-Korts [ctb], Emilie J Millet [ctb], Joao Paulo [ctb], Maikel Verouden [ctb], Willem Kruijer [ctb], Ron Wehrens [ctb], Choazhi Zheng [ctb]

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statgenGxE.pdf |statgenGxE.html✨
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NEWS

# Install 'statgenGxE' in R:
install.packages('statgenGxE', repos = c('https://biometris.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/biometris/statgengxe/issues

Datasets:
  • TDMaize - Field data for a maize experiment in Tlaltizapan, Mexico
  • dropsPheno - DROPS data set

On CRAN:

geneticsgxegxe-modellingmulti-trial-analysis

14 exports 10 stars 1.85 score 55 dependencies 13 scripts 906 downloads

Last updated 15 hours agofrom:01ced0f066. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 17 2024
R-4.5-winNOTESep 17 2024
R-4.5-linuxNOTESep 17 2024
R-4.4-winNOTESep 17 2024
R-4.4-macNOTESep 17 2024
R-4.3-winNOTESep 17 2024
R-4.3-macNOTESep 17 2024

Exports:correlationsCRDRdiagnosticsgxeAmmigxeFwgxeGGEgxeMegaEnvgxeStabilitygxeVarCompgxeVarCovheritmultMissingreportvc

Dependencies:bootclicolorspacedata.tabledotCall64emmeansestimabilityevaluatefansifarverfieldsggplot2ggrepelgluegridExtragtablehighrisobandknitrlabelinglatticelifecyclelme4magrittrmapprojmapsMASSMatrixmgcvminqamunsellmvtnormnlmenloptrnumDerivpillarpkgconfigqtlR6RColorBrewerRcppRcppEigenrlangscalesspamSpATSstatgenSTAtibbleutf8vctrsviridisLitewithrxfunxtableyaml

Genotype by Environment analysis using statgenGxE

Bart-Jan van Rossum

Rendered fromstatgenGxE.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2023-12-12
Started: 2019-05-03